Package: fossilbrush 1.0.5

fossilbrush: Automated Cleaning of Fossil Occurrence Data

Functions to automate the detection and resolution of taxonomic and stratigraphic errors in fossil occurrence datasets. Functions were developed using data from the Paleobiology Database.

Authors:Joe Flannery-Sutherland [aut, cre], Nussaïbah Raja-Schoob [aut, ctb], Ádam Kocsis [aut, ctb], Wolfgang Kiessling [aut]

fossilbrush_1.0.5.tar.gz
fossilbrush_1.0.5.zip(r-4.7-any)fossilbrush_1.0.5.zip(r-4.6-any)fossilbrush_1.0.5.zip(r-4.5-any)
fossilbrush_1.0.5.tgz(r-4.6-any)fossilbrush_1.0.5.tgz(r-4.5-any)
fossilbrush_1.0.5.tar.gz(r-4.7-any)fossilbrush_1.0.5.tar.gz(r-4.6-any)
fossilbrush_1.0.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
fossilbrush/json (API)

# Install 'fossilbrush' in R:

install.packages('fossilbrush', repos = c('https://jf15558.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jf15558/fossilbrush/issues

Datasets:

brachios - Brachios
geog_lookup - Geog_lookup
GTS_2020 - GTS_2020
GTS_2020_changelog - GTS_2020_changelog
pbdb_fields - Geog_lookup
pbdb_kingdoms - Pbdb_kingdoms
sep_code - Sep_code
sepkoski - Sepkoski

On CRAN:

4.10 score 25 scripts 389 downloads 20 exports 17 dependencies

Last updated from:15c73aeb2b. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	146
source / vignettes	OK	309
linux-release	OK	170
macos-release	OK	177
macos-oldrel	OK	188
windows-devel	OK	128
windows-release	OK	93
windows-oldrel	OK	119
wasm-release	OK	111

Exports:add_itp add_kingdoms age_ranges check_taxonomy chrono_scale clean_name densify discrete_ranks find_duplicates find_peaks flag_ranges format_check intersect_ranges pacmacro_ranges plot_dprofile plot_taxa resolve_duplicates revise_ranges spell_check threshold_ranges

Dependencies:cli cpp11 curl data.table glue igraph lattice lifecycle magrittr Matrix pbapply pkgconfig rlang stringdist stringi stringr vctrs

Introduction to fossilbrush (v1.0.3), an R package for automated cleaning and error flagging of fossil occurrence data

Rendered fromfossilbrush_vignette.Rmdusingknitr::rmarkdown

Last update: 2024-01-23
Started: 2022-03-17

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
add_itp	add_itp
add_kingdoms	add_kingdoms
roxygen documentation	age_ranges
assess_duplicates	assess_duplicates
brachios	brachios
check_taxonomy	check_taxonomy
chrono_scale	chrono_scale
roxygen documentation	clean_name
densify	densify
roxygen documentation	discrete_ranks
find_duplicates	find_duplicates
find_peaks	find_peaks
flag_ranges	flag_ranges
format_check	format_check
geog_lookup	geog_lookup
get_pbdb	get_pbdb
GTS_2020	GTS_2020
GTS_2020_changelog	GTS_2020_changelog
intersect_ranges	intersect_ranges
pacmacro_ranges	pacmacro_ranges
geog_lookup	pbdb_fields
pbdb_kingdoms	pbdb_kingdoms
plot_dprofile	plot_dprofile
plot_taxa	plot_taxa
quantile_coef_density_BMS	quantile_coef_density_BMS
resolve_duplicates	resolve_duplicates
revise_ranges	revise_ranges
sep_code	sep_code
sepkoski	sepkoski
spell_check	spell_check
tgraph	tgraph
threshold_peaks	threshold_peaks
threshold_ranges	threshold_ranges
update_graph	update_graph